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Software - BlueCrystal Phase 3

 

We will be installing software on BlueCrystal Phase 3 and will gradually update this page.

For software installed on BlueCrystal Phase 1 and Phase 2, please refer to BlueCrystal Phase 1 software and BlueCrystal Phase 2 software.

LanguagesModuleInfo / Links
GCC-4.6.4languages/gcc-4.6.4
Intel Compiler XEintel/compiler/64/12.1/2011_sp1.8.273Ver. 12.1.2.273
Intel Compiler XEintel-cluster-studio/compiler/64/13.1/117Ver. 13.0.1.117
Intel Compiler XElanguages/intel-compiler-14Ver. 14.0.0
Java JDK 1.7.0-40languages/java-jdk-1.7.0-40
PERL 5.14.2languages/perl-5.14.2
Python 2.7.5languages/python-2.7.5Includes BLAS, LAPACK, ATLAS, NUMPY and SCIPY
R 2.15.1languages/R-2.15.1Includes a lot of additional packages. See here for details.
R 3.0.2languages/R-3.0.2Includes a lot of additional packages. See here for details..
LibrariesModule
GNU:
ATLASlibraries/gnu_builds/atlas-3.10.1
BLAS
CBLAS
GSL 1.16libraries/gnu_builds/gsl-1.16
ApplicationModule
Abaqus 6.12apps/abaqus-6.12
Amber 12apps/amber-12
GROMACS 4.5.5apps/gromacs-4.5.5
LS-DYNA 971R6.1.0apps/ls-dyna971-r6.1.0
Matlab R2013bapps/matlab-r2013b

Running MATLAB on BlueCrystal advises on:

  • Available toolboxes.
  • Packaging your code using the MATLAB compiler.
  • High performance MATLAB.
NASTRAN 2012.1apps/nastran-2012.1
OpenBabel 2.3.2apps/openbabel-2.3.2
ParaView 4.0.12apps/paraview-4.0.1
Trinity 2013.8.142apps/trinity-2013.8.14
ToolsModule
CMAKE 2.8.1atools/cmake-2.8.1
CMAKE 2.8.12atools/cmake-2.8.12
GIT 1.8.4.2tools/git-1.8.4.2
Subversion-1.8.4tools/subversion-1.8.4
Allinea DDT Debuggerallinea/tools/4.0

Recipes for Using Allinea's DDT Parallel Debugger on BlueCrystal Phase 3 advises on:

  • Building your Program.
  • Using DDT to Submit a Job to the Queuing System.
  • Attaching DDT to a Job Already Running.
Intel VTune 2013intel-cluster-studio/vtune/vtune-2013

Using Intel VTune Amplifier on BlueCrystal Phase 3 advises on:

  • Preparing your application
  • Performing a Hotspot Analysis in Batch Mode
  • Profiling Multi-threaded Code and MPI code

 
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