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Social and Community Medicine - Applications Installed
The following packages are installed on BlueCrystal Phase 1:
EIGENSOFT
http://genepath.med.harvard.edu/~reich/EIGENSOFT2.0BETA.tar.gzEigensoft is set up as a module. If users wish to use it they should first execute: module load eigensoft
FBAT
http://biosun1.harvard.edu/~fbat/fbat.htmGenehunter
http://linkage.rockefeller.edu/soft/gh/If genehunter is used in research it must be cited as follows:
* How to cite or get more information on GENEHUNTER
L. Kruglyak, M.J. Daly, M.P. Reeve-Daly, and E.S. Lander. "Parametric and
Nonparametric Linkage Analysis: A Unified Multipoint Approach".
American Journal of Human Genetics 58:1347-1363 (June 1996).
L. Kruglyak and E.S. Lander. "Faster Multipoint Linkage Analysis
Using Fourier Transforms". Journal of Computational Biology 5:1-7 (1998).
GTOOL
http://www.well.ox.ac.uk/~cfreeman/software/gwas/gtool.htmlHAPLOVIEW
http://www.broad.mit.edu/mpg/haploviewIMPUTE
https://mathgen.stats.ox.ac.uk/impute/impute.htmlMendel
http://www.genetics.ucla.edu/software/Mendel_800_Documentation.pdf"PLINK
http://pngu.mgh.harvard.edu/~purcell/plink/download.shtmlSNPTEST
http://www.stats.ox.ac.uk/~marchini/software/gwas/snptest.htmlSolar
http://txbiomed.org/departments/genetics_detail.aspx?p=37
To use Solar users must register by e-mailing /solar@sfbrgenetics.org/ with your username and e-mail address.